Wow, this is a tough one. There are many variables here. Adding fish should have no effect on any of the video attributes, like screen position.
Could you be more specific about where you got the MA3Beta.zip?
The program doesn't seem to be running in full-screen mode in the first pic, as the titlebar at the bottom of the screen is still showing. What happens when you press the "F" key to switch back and forth between Windowed and Fullscreen mode?
What is being displayed in the upper-left corner of the screen? The resolution of the pics is not good enough to make it out.
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